Prof Tuan Duong



Associate Professor

Department
Biochemistry, Genetics and Microbiology
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My research focuses on different aspects of plant pathogenic fungi including taxonomy, population biology, genetics and genomics. I mainly work with species and genera in the Ophiostoatales and Microascales (Ceratocystidaceae) and use these as the systems for pursuing various research questions such as species boundary and speciation, evolution of biological traits, genetics and genomics basis of fungal pathogenicity and host speciation.

My Journal Articles

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Marais I, Buitendag C, Duong TA, Crampton BG, Theron J, Kidanemarium D, Berger DK. (2024) Double-stranded RNA uptake for the control of the maize pathogen Cercospora zeina. Plant Pathology Online first:1-11. 10.1111/ppa.13909
Pham NQ, Suzuki H, Duong TA, Wingfield BD, Barnes I, Duran A, Wingfield MJ. (2024) Cryptic sexual reproduction in an emerging Eucalyptus shoot and foliar pathogen. Plant Pathology 10.1111/ppa.13876
Morrison EW, Duong TA, Garnas JR. (2024) A high-quality draft genome sequence of Neonectria faginata, causative agent of beech bark disease of Fagus grandifolia. Microbiology Resource Announcements 10.1128/mra.01048-23
Pham NQ, Duong TA, Wingfield BD, Barnes I, Duran A, Wingfield MJ. (2023) Characterisation of the mating-type loci in species of Elsinoe causing scab diseases. Fungal Biology 127:1484–1490. 10.1016/j.funbio.2023.11.003
Visagie CM, Magistà D, Ferrara M, Balocchi F, Duong TA, Eichmeier A, Gramaje D, Aylward J, Baker SE, Barnes I, Calhoun S, De Angelis M, Frisvad JC, Hakalova E, Hayes RD, Houbraken J, Grigoriev IV, LaButti K, Leal C, Lipzen C, Ng V, Pangilinan J, Pecenka J, Perrone G, Piso A, Savage E, Spetik E, Wingfield MJ, Zhang Y, Wingfield BD. (2023) IMA genome-F18 - The reidentification of Penicillium genomes available in the NCBI and draft genomes for Penicillium species from dry cured meat, Penicillium biforme, P. brevicompactum, P. solitum, and P. cvjetkovicii, Pewenomyces kutranfy, Pew. tapulicola, Pew. kalosus, Teratosphaeria carnegiei, and Trichoderma atroviridae SC1. IMA Fungus 14(21) 10.1186/s43008-023-00121-w
Welgemoed T, Duong TA, Barnes I, Stukenbrock EH, Berger DK. (2023) Population genomic analyses suggest recent dispersal events of the pathogen Cercospora zeina into East and Southern African maize cropping systems. G3 Genes|Genomes|Genetics 10.1093/g3journal/jkad214
Wingfield MJ, Pham NQ, Marincowitz S, Duong TA, Wingfield BD, Wilson AM. (2023) Blast from the past: a study of decades-old fungal cultures resolves a long-standing tree disease mystery. Journal of Plant Pathology 10.1007/s42161-023-01502-1
Anneri Lötter, Tuan A Duong, Julia Candotti, Eshschar Mizrachi, Jill L Wegrzyn, Alexander A Myburg. (2023) Haplogenome assembly reveals structural variation in Eucalyptus interspecific hybrids. GigaScience 12 10.1093/gigascience/giad064
Li WW, Chen SF, Wingfield MJ, Duong TA. (2023) Calonectria species associated with diseased leaves and soils in southern China Eucalyptus plantations. Phytopathology Research 5(29) 10.1186/s42483-023-00183-z
Macharia TN, Duong TA, Moleleki LN. (2023) n silico secretome analyses of the polyphagous root-knot nematode Meloidogyne javanica: a resource for studying M. javanica secreted proteins. BMC Genomics 24:296. 10.1186/s12864-023-09366-6
Liu QL, Wingfield MJ, Duong TA, Wingfield BD. (2023) Leaf blight in a Eucalyptus plantation caused by Calonectria spp. originating from both leaves and soils. Research Square 10.21203/rs.3.rs-2529138/v1
Osborn RK, Castro J, Duong TA, Hulcr J, Li Y, Martínez M, Cognato AI. (2023) Symbiotic Fungi Associated With Xyleborine Ambrosia Beetles (Coleoptera: Curculionidae: Scolytinae) and the Imperative of Global Collaboration. Annals of the Entomological Society of America 116:51-71. 10.1093/aesa/saac024
Chang J, Duong TA, Schoeman C, Ma X, Roodt D, Barker N, Li Z, Van de Peer V, Mizrachi E. (2023) The Genome of the King Protea, Protea cynaroides. The Plant Journal 113:262-276. 10.1111/tpj.16044
Candotti J, Christie N, Ployet R, Mostert-O’Neill MM, Reynolds SM, Neves LG, Naidoo S, Mizrachi E, Duong TA, Myburg AA. (2023) Haplotype mining panel for genetic dissection and breeding in Eucalyptus. The Plant Journal 113:174-185. 10.1111/tpj.16026
Li WW, Chen SF, Wingfield MJ, Duong TA. (2023) Calonectria queenslandica: Causal agent of Eucalyptus leaf blight in Southern China. Plant Disease 107:730-742. 10.1094/PDIS-01-22-0196-RE
Wingfield BD, Berger DK, Coetzee MPA, Duong TA, Martin A, Pham NQ, Van den Berg N, Wilken PM, Arun-Chinnappa KS, Barnes I, Buthelezi S, Dahanayaka BA, Durán A, Engelbrecht J, Feurtey A, Fourie A, Fourie G, Hartley J, Kabwe ENK, Maphosa M, Narh Mensah DL, Nsibo DL, Potgieter L, Poudel B, Stukenbrock EH, Thomas C, Vaghefi N, Welgemoed T, Wingfield MJ. (2022) IMA genome‑F17 Draft genome sequences of an Armillaria species from Zimbabwe, Ceratocystis colombiana, Elsinoë necatrix, Rosellinia necatrix, two genomes of Sclerotinia minor, short‑read genome assemblies and annotations of four Pyrenophora teres isolates from barley grass, and a long-read genome assembly of Cercospora zeina. 13:19. 10.1186/s43008-022-00104-3
Ngo TT, Nguyen B-LT, Duong TA, Nguyen T-HT, Nguyen TL, Kieu KT, Do M-HT, Nguyen SV, Thang ND, Pham HTL. (2022) Polyphasic evaluation and cytotoxic investigation of isolated cyanobacteria with an emphasis on potent activities of a Scytonema strain. Frontiers in Microbiology 13:1025755. 10.3389/fmicb.2022.1025755
Liu QL, Wingfield MJ, Doung TA, Wingfield BD, Chen SF. (2022) Diversity and distribution of Calonectria species from plantation and forest soils in FuJian Province, China. Journal of Fungi 8(8):811. 10.3390/jof8080811
Maphosa MN, Steenkamp ET, Kanzi AM, Van Wyk S, De Vos L, Santana QC, Duong TA, Wingfield BD. (2022) Intra-Species genomic variation in the pine pathogen Fusarium circinatum. Journal of Fungi 8:657. 10.3390/jof8070657
Araújo JPM, Li U, Duong TA, Smith ME, Adams A, Hulcr J. (2022) Four new species of Harringtonia: unravelling the laurel wilt fungal genus. Journal of Fungi 8:613. 10.3390/jof8060613
Maphosa M, Steenkamp ET, Kanzi A, van Wyk S, De Vos L, Santana QC, Duong AT, Wingfield BD. (2022) Intra-species genomic variation in the pine pathogen Fusarium circinatum. Preprints 2022040298 10.20944/preprints202204.0298.v1 PDF
De Beer ZW, Procter M, Wingfield MJ, Marincowitz S, Duong TA. (2022) Generic boundaries in the Ophiostomatales reconsidered and revised. Studies in Mycology 101:57-120. 10.3114/sim.2022.101.02
Wingfield BD, Wingfield MJ, Duong TA. (2022) Molecular basis of cycloheximide resistance in the Ophiostomatales revealed. Current Genetics :1-10. 10.1007/s00294-022-01235-1
Wingfield BD, De Vos L, Wilson AM, Duong AT, Vaghefi N, Botes A, Kharwar RN, Chand R, Poudel B, Aliyu H, Barbetti MJ, Chen S, de Maayer P, Liu F, Navathe S, Sinha S, Steenkamp ET, Suzuki H, Tshisekedi KA, van der Nest MA, Wingfield MJ. (2022) Draft genome assemblies of Fusarium marasasianum, Huntiella abstrusa, two Immersiporthe knoxdaviesiana isolates, Macrophomina pseudophaseolina, Macrophomina phaseolina, Naganishia randhawae, and Pseudocercospora cruenta. IMA Fungus 13(1):3. 10.1186/s43008-022-00089-z
Engelbrecht J, Duong TA, Paap T, Hulbert JM, Hanneman J, Van den Berg N. (2022) Population genetic analyses of Phytophthora cinnamomi reveals three lineages and movement between natural vegetation and avocado orchards in South Africa. 10.1094/PHYTO-10-21-0414-R
Swart Z, Duong T, Wingfield BD, Postma A, Slippers B. (2022) The relevance of studying insect–nematode interactions for human disease. Pathogens and Global Health 116:140-145. 10.1080/20477724.2021.1996796
McTaggart AR, James TY, Shivas RG, Drenth A, Wingfield BD, Summerell BA, Duong TA. (2021) Population genomics reveals historical and ongoing recombination in the Fusarium oxysporum species complex. Studies in Mycology 99:100132. 10.1016/j.simyco.2021.100132
Chang R, Wingfield MJ, Marincowitz S, De Beer ZW, Zhou X, Duong TA. (2021) Ophiostomatoid fungi including a new species associated with Asian larch bark beetle Ips subelongatus, in Heilongjiang (Northeast China). Fungal Systematics and Evolution 8:155-161. 10.3114/fuse.2021.08.12
Duong AT, Aylward J, Ametrano CG, Poudel E, Santana QC, Wilken PM, Martin A, Arun-Chinnappa KS, De Vos L, DiStefano I, Grewe F, Huhndorf S, Lumbsch HT, Rakoma JR, Steenkamp ET, Sun Y, van der Nest MA, Wingfield MJ, Yilmaz N, Wingfield BD. (2021) Draft genome assembly of Fusarium pilosicola, Meredithiella fracta, Niebla homalea, Pyrenophora teres hybrid WAC10721, and Teratosphaeria viscida. IMA Fungus 12(1):30. 10.1186/s43008-021-00077-9
Liu FF, Duong TA, Barnes I, Wingfield MJ, Chen SF. (2021) Population diversity and genetic structure reveal patterns of host association and anthropogenic impact for the globally important fungal tree pathogen Ceratocystis manginecans. Journal of Fungi 7:759. 10.3390/jof7090759 PDF
Nel WJ, De Beer ZW, Wingfield MJ, Poulsen M, Aanen DK, Wingfield BD, Duong TA. (2021) Phylogenetic and phylogenomic analyses reveal two new genera and three new species of ophiostomatalean fungi from termite fungus combs. Mycologia 113(6):1199-1217. 10.1080/00275514.2021.1950455
Linnakoski R, Lasarov I, Veteli P, Tikkanen O-P, Viiri H, Jyske T, Kasanen R, Duong TA, Wingfield MJ. (2021) Filamentous fungi and yeasts associated with mites phoretic on Ips typographus in Eastern Finland. Forests 12(6):743. 10.3390/f12060743
Crous PW, Hernández-Restrepo M, Schumacher RK, Cowan DA, Maggs-Kölling G, Marais E, Wingfield MJ, Yilmaz N, Adan OCG, Akulov A, Álvarez Duarte E, Berraf-Tebbal A, Bulgakov TS, Carnegie AJ, de Beer ZW, Decock C, Dijksterhuis C, Duong TA, Eichmeier A, Hien LT, Houbraken JAMP, Khanh TN, Liem NV, Lombard L, Lutzoni FM, Miadlikowska JM, Nel WJ, Pascoe IG, Roets F, Roux J, Samson RA, Shen M, Spetik M, Thangavel R, Thanh HM, Thao LD, van Nieuwenhuijzen EJ, Zhang JQ, Zhang Y, Zhao LL, Groenewald JZ. (2021) New and Interesting Fungi. 4. Fungal Systematics and Evolution 7:255-343. 10.3114/fuse.2021.07.13 PDF
Engelbrecht J, Duong TA, Prabhu AS, Seedat M, van den Berg N. (2021) Genome of the destructive oomycete Phytophthora cinnamomi provides insights into its pathogenicity and adaptive potential. BMC Genomics 22:302. 10.1186/s12864-021-07552-y
Nel WJ, Wingfield MJ, De Beer ZW, Duong TA. (2021) Ophiostomatalean fungi associated with wood boring beetles in South Africa including two new species. Antonie van Leeuwenhoek 114(6):667-686. 10.1007/s10482-021-01548-0
van der Nest MA, Chávez R, De Vos L, Duong TA, Gil-Durán C, Ferreira MA, Lane FA, Levicán G, Santana QC, Steenkamp ET, Suzuki H, Tello M, Rakoma JR, Vaca I, Valdés N, Wilken PM, Wingfield MJ, Wingfield BD. (2021) Draft genome sequences of Penicillium roqueforti, Fusarium sororula, Chrysoporthe puriensis, and Chalaropsis populi. IMA Fungus 12:5. 10.1186/s43008-021-00055-1 PDF
Phasha MM, Wingfield MJ, Wingfield BD, Coetzee MPA, Hallen-Adams H, Fru F, Swalarsk-Parry BS, Yilmaz N, Duong TA, Steenkamp ET. (2021) Ras2 is important for growth and pathogenicity in Fusarium circinatum. 150:103541. 10.1016/j.fgb.2021.103541
Pham NQ, Marincowitz S, Solís M, Duong TA, Wingfield BD, Barnes I, Slippers B, Muro Abad JI, Durán A, Wingfield MJ. (2021) Eucalyptus scab and shoot malformation: A new and serious foliar disease of Eucalyptus caused by Elsinoe necatrix sp. nov.. Plant Pathology 70:1230-1242. 10.1111/ppa.13348 PDF
Linnakoski R, Sutela S, Coetzee MPA, Duong TA, Pavlov IN, Litovka YA, Hantula J, Wingfield BD, Vainio EJ. (2021) Armillaria root rot fungi host single-stranded RNA viruses. 11:7336. 10.1038/s41598-021-86343-7
Liu QL, Li JQ, Wingfield MJ, Duong TA, Wingfield BD, Crous PW, Chen SF. (2020) Reconsideration of species boundaries and proposed DNA barcodes for Calonectria. Studies in Mycology 10.1016/j.simyco.2020.08.001 PDF
Wilken PM, Kharwar RN, Lumbsch HT, Navathe S, Pérez CA, Ramírez-Berrutti N, Sharma R, Sun Y, Wingfield BD, Huhndorf S, Duong TA, Aylward J, Chand R, Grewe F, Lane FA, Sinha S, Ametrano C, Distefano I, Divakur PK, Wingfield MJ. (2020) Draft genome sequences of Ambrosiella cleistominuta, Cercospora brassicicola, C. citrullina, Physcia stellaris and Teratosphaeria pseudoeucalypti.. IMA Fungus 11(19) 10.1186/s43008-020-00039-7
Nel WJ, De Beer ZW, Wingfield MJ, Duong TA. (2020) The granulate ambrosia beetle, Xylosandrus crassiusculus (Coleoptera: Curculionidae, Scolytinae), and its fungal symbiont found in South Africa. Zootaxa 4838(3):427-435. 10.11646/zootaxa.4838.3.7
Chang R, Duong TA, Taerum SJ, Wingfield MJ, Zhou XD, De Beer ZW. (2020) Ophiostomatoid fungi associated with mites phoretic on bark beetles in Qinghai, China. IMA Fungus :15. 10.1186/s43008-020-00037-9
Marincowitz S, Duong TA, Stephen SJ, De Beer ZW, Wingfield MJ. (2020) Fungal associates of an invasive pine-infesting bark beetle, Dendroctonus valens including seven new Ophiostomatalean fungi. Persoonia 45:177-195. 10.3767/persoonia.2020.45.07 PDF
Fourie A, de Jonge R, van der Nest MA, Duong TA, Wingfield MJ, Wingfield BD, Barnes I. (2020) Genome comparisons suggest an association between Ceratocystis host adaptations and effector clusters in unique transposable element families. 143:103433. 10.1016/j.fgb.2020.103433
Hulcr J, Barnes I, De Beer ZW, Duong TA, Gazis R, Johnson AJ, Jusino MA, Kasson MT, Li Y, Lynch S, Mayers C, Musvuugwa T, Roets F, Seltmann KC, Six D, Vanderpool D, Villari C. (2020) Bark beetle mycobiome: collaboratively defined research priorities on a widespread insect-fungus symbiosis. Symbiosis 81:101-113. 10.1007/s13199-020-00686-9 PDF
Havenga M, Chen S, Wilken PM, Duong TA, Tatham CT, Dreyer LL, Roets F, Wingfield MJ, Wingfield BD, Aylward J. (2020) Mating strategy and mating type distribution in six global populations of the Eucalyptus foliar pathogen Teratosphaeria destructans. Fungal Genetics and Biology 137:103350. 10.1016/j.fgb.2020.103350
Musvuugwa T, De Beer ZW, Dreyer LL, Duong T, Marincowitz S, Oberlander KC, Roets F. (2020) New ophiostomatoid fungi from wounds on storm-damaged trees in Afromontane forests of the Cape Floristic Region. Mycological Progress 19(1):81-95. 10.1007/s11557-019-01545-8
Liu FF, de Beer ZW, Divakar PK, Crespo A, Pizarro D, Wingfield MJ, Wingfield BD, Kanzi AM, Sayari M, Chang RL, Ferreira MA, Chen SF, Duong TA. (2019) Draft genome sequences of five Calonectria species from Eucalyptus plantations in China, Celoiporthe dispersa, Sporothrix phasma and Alectoria sarmentosa. IMA Fungus 10(22) 10.1186/s43008-019-0023-5
Wingfield BD, van Heerden CJ, van der Nest MA, Steenkamp ET, Roets F, Geiser DM, Duong TA, Dreyer LL, Coetzee MPA, Barnes I, Aylward J, Bushula-Njah VS, Simpson MC, Fourie A, Wingfield MJ. (2019) Draft genome sequences of Fusarium xylarioides, Teratosphaeria gauchensis and T. zuluensis and genome annotation for Ceratocystis fimbriata. IMA Fungus 10(13) 10.1186/s43008-019-0013-7 PDF
Nel WJ, Duong TA, De Beer ZW, Wingfield MJ. (2019) Black root rot: A long known but little understood disease. Plant Pathology 68(5):834-842. 10.1111/ppa.13011 PDF
van der Nest MA, Wingfield MJ, McTaggart AR, Van Wyk S, De Vos L, Trollip C, Santana QC, Naidoo K, Dong TA, Wilken PM, Chan W-Y, Palmer M, Soal NA, Roodt D, Steenkamp ET, Wingfield BD. (2019) Genomic analysis of the aggressive tree pathogen Ceratocystis albifundus. Fungal Biology 10.1016/j.funbio.2019.02.002 PDF
Chang R, Duong TA, Taerum SJ, Wingfield MJ, Zhou XD, Yin M, De Beer ZW. (2019) Ophiostomatoid fungi associated with the spruce bark beetle Ips typographus, including 11 new species from China. Persoonia 42:50-74. 10.3767/persoonia.2019.42.03 PDF
Wingfield BD, Kolarik M, Menzies JG, Naidoo K, Pochopski O, Shoukouhi P, Santana QC, Seifert KA, Soal NA, Steenkamp ET, Tatham CT, Van der Nest MA, Havenga M, Findlay W, Liu M, Nguyen HDT, Lane FA, Morgan SW, De Vos L, Wilken PM, Doung TA, Aylward J, Coetzee MPA, Dadej K, De Beer ZW, Wingfield MJ. (2018) Nine draft genome sequences of Claviceps purpurea s.lat., including C. arundinis, C. humidiphila, and C. cf. spartinae, pseudomolecules for the pitch canker pathogen Fusarium circinatum, draft genome of Davidsoniella eucalypti, Grosmannia galeiformis, Quambalaria eucalypti, and Teratosphaeria destructans. IMA Fungus 9(2):401-418. 10.5598/imafungus.2018.09.02.10 PDF
McTaggart AR, Duong TA, Le VQ, Shuey LS, Smidt W, Naidoo S, Wingfield MJ, Wingfield BD. (2018) Chromium sequencing: the doors open for genomics of obligate plant pathogens. BioTechniques 65(5):253-257. 10.2144/btn-2018-0019 PDF
Nel WJ, Duong TA, Wingfield MJ, Wingfield BD, Hammerbacher A, De Beer ZW. (2018) Heterothallism revealed in the root rot fungi Berkeleyomyces basicola and B. rouxiae. Fungal Biology 122(11):1031-1040. 10.1016/j.funbio.2018.08.006 PDF
Wingfield BD, Bills GF, Dong Y, Huang W, Nel WJ, Swalarsk-Parry BS, Vaghefi N, Wilken PM, An Z, de Beer ZW, De Vos L, Chen L, Duong TA, Gao Y, Hammerbacher A, Kikkert JR, Li Y, Li H, Li K, Li Q, Liu X, Ma X, Naidoo K, Pethybridge SJ, Sun J, Steenkamp ET, van der Nest M, van Wyk S, Wingfield MJ, Xiong C, Yue Q, Zhang X. (2018) IMA Genome-F 9 Draft genome sequence of Annulohypoxylon stygium, Aspergillus mulundensis, Berkeleyomyces basicola (syn. Thielaviopsis basicola), Ceratocystis smalleyi, two Cercospora beticola strains, Coleophoma cylindrospora, Fusarium fracticaudum, Phialophora cf. hyalina, and Morchella septimelata. IMA Fungus 9(1):199-223. 10.5598/imafungus.2018.09.01.13 PDF
De Beer ZW, Marincowitz S, Duong TA, Wingfield MJ. (2018) (2592) Proposal to conserve Endoconidiophora fagacearum (Bretziella fagacearum, Ceratocystis fagacearum) against Chalara quercina (Thielaviopsis quercina) (Ascomycota: Sordariomycetes: Microascales). Taxon 67:440-440. 10.12705/672.14
Nel WJ, Duong TA, Wingfield BD, Wingfield MJ, De Beer ZW. (2018) A new genus and species for the globally important, multi-host root pathogen Thielaviopsis basicola. Plant Pathology 67:871-882. 10.1111/ppa.12803 PDF
Chang R, Duong TA, Taerum SJ, Wingfield MJ, Zhou X, De Beer ZW. (2017) Ophiostomatoid fungi associated with conifer-infesting beetles and their phoretic mites in Yunnan, China. MycoKeys 28:19-64. 10.3897/mycokeys.28.21758 PDF
Engelbrecht J, Duong TA, van den Berg N. (2017) New microsatellite markers for population studies of Phytophthora cinnamomi, an important global pathogen. Scientific Reports 7:17631. 10.1038/s41598-017-17799-9
Wingfield BD, Berger DK, Steenkamp ET, Lim H-J, Duong TA, Bluhm BH, De Beer ZW, De Vos L, Fourie G, Naidoo K, Olivier NA, Lin Y, Van der Peer Y, Joubert F, Crampton BG, Swart V, Soal N, Tatham C, Van der Nest MA, Van der Merwe NA, Van Wyk S, Wilken PM, Wingfield MJ. (2017) IMA Genome-F 8 Draft genome of Cercospora zeina, Fusarium pininemorale, Hawksworthiomyces lignivorus, Huntiella decipiens and Ophiostoma ips. IMA Fungus 8 (2):385‑396. 10.5598/imafungus.2017.08.02.10 PDF
De Beer ZW, Marincowitz S, Duong TA, Wingfield MJ. (2017) Bretziella, a new genus to accommodate the oak wilt fungus, Ceratocystis fagacearum (Microascales, Ascomycota). MycoKeys 27:1-19. 10.3897/mycokeys.27.20657 PDF
Pham HTL, Nguyen LTT, Duong TA, Bui DTT, Doan QT, Nguyen HTT, Mundt S. (2017) Diversity and bioactivities of nostocacean cyanobacteria isolated from paddy soil in Vietnam. Systematic and Applied Microbiology 40(8):470-481. 10.1016/j.syapm.2017.08.001
Marincowitz S, Duong TA, Heiniger U, Wingfield BD, Wingfield MJ, De Beer ZW. (2017) A new Leptographium species from the roots of declining Pinus sylvestris in Switzerland. Forest Pathology 47(4):e12346. 10.1111/efp.12346 PDF
Taerum SJ, Hoareau TB, Duong TA, De Beer ZW, Jankowiak R, Wingfield MJ. (2017) Putative origins of the fungus Leptographium procerum. Fungal Biology 121(1):82-94. 10.1016/j.funbio.2016.09.007 PDF
Wingfield BD, Duong TA, Hammerbacher A, van der Nest MA, Wilson A, Chang R, de Beer ZW, Steenkamp ET, Wilken PM, Naidoo K, Wingfield MJ. (2016) IMA Genome-F 7 Draft genome sequences for Ceratocystis fagacearum, C. harringtonii, Grosmannia penicillata, and Huntiella bhutanensis. IMA Fungus 7(2):317-323. 10.5598/imafungus.2016.07.02.11 PDF
De Beer ZW, Marincowitz S, Duong TA, Kim JJ, Rodrigues A, Wingfield MJ. (2016) Hawksworthiomyces gen. nov. (Ophiostomatales), illustrates the urgency for a decision on how to name novel taxa known only from environmental nucleic acid sequences (ENAS). Fungal Biology 120(11):1323-1340. 10.1016/j.funbio.2016.07.004 PDF
De Beer ZW, Duong TA, Wingfield MJ. (2016) The divorce of Sporothrix and Ophiostoma: solution to a problematic relationship. Studies in Mycology 83:165–191. 10.1016/j.simyco.2016.07.001 PDF
Wingfield BD, Ambler JM, Coetzee MPA, De Beer ZW, Duong TA, Joubert F, Hammerbacher A, McTaggart AR, Naidoo K, Nguyen HDT, Ponomareva E, Santana QS, Seifert KA, Steenkamp ET, Trollip C, Van der Nest MA, Visagie CM, Wilken PM, Wingfield MJ, Yilmaz N. (2016) IMA Genome-F 6: Draft genome sequences of Armillaria fuscipes, Ceratocystiopsis minuta, Ceratocystis adiposa, Endoconidiophora laricicola, E. polonica and Penicillium freii DAOMC 242723. IMA Fungus 7(1):217-227. 10.5598/imafungus.2016.07.01.11 PDF
Musvuugwa T, de Beer ZW, Duong TA, Dreyer LL, Oberlander K, Roets F. (2016) Wounds on Rapanea melanophloeos provide habitat for a large diversity of Ophiostomatales including four new species. Antonie van Leeuwenhoek 109(6):877-894. 10.1007/s10482-016-0687-4
Duong TA, De Beer ZW, Wingfield BD, Wingfield MJ. (2016) Mating type markers reveal high levels of heterothallism in Leptographium sensu lato. Fungal Biology 120(4):538-546. 10.1016/j.funbio.2016.01.001 PDF
Hernández-Restrepo M, Schumacher RK, Wingfield MJ, Ahmad I, Cai L, Duong TA, Edwards J, Gené J, Groenewald JZ, Jabeen S, Khalid AN, Lombard L, Madrid H, Marin-Felix Y, Marincowitz S, Miller AN, Rajeshkumar K-C, Rashid A, Sarwar S, Stchigel AM, Taylor PWJ, Zhou N, Crous PW. (2016) Fungal Systematics and Evolution: FUSE 2. Sydowia 68:193-230. PDF
Crous PW, Wingfield MJ, Le Roux JJ, Richardson DM, Strasberg D, Shivas RG, Alvarado P, Edwards J, Moreno G, Sharma R, Sonawane M.S., Tan YP, Altés A, Barasubiye T, Barnes CW, Blanchette RA, Boertmann D, Bogo A, Carlavilla JR, Cheewangkoon R, Daniel R, de Beer ZW, de Jesús Yáñez-Morales M, Duong TA, Fernández-Vicente J, Geering ADW, Guest DI, Held BW, Heykoop M, Hubka V, Ismail AM, Kajale SC, Khemmuk W, Kolařík M, Kurli R, Lebeuf R, Lévesque CA, Lombard L, Magista D, Manjón JL, Marincowitz S, et al. (2015) Fungal Planet description sheets: 371–399. Persoonia 35:264-327. 10.3767/003158515X690269 PDF
Wingfield BD, Barnes I, De Beer ZW, De Vos L, Duong TA, Kanzi AM, Naidoo K, Nguyen HDT, Santana QC, Sayari M, Seifert KA, Steenkamp ET, Trollip C, Van der Merwe N, Van der Nest MA, Wilken PM, Wingfield MJ. (2015) Draft genome sequences of Ceratocystis eucalypticola, Chrysoporthe cubensis, C. deuterocubensis, Davidsoniella virescens, Fusarium temperatum, Graphilbum fragrans, Penicillium nordicum, and Thielaviopsis musarum. IMA Fungus 6(2):493-506. 10.5598/imafungus.2015.06.02.13 PDF
Stielow JB, Lévesque CA, Seifert KA, Meyer W, Irinyi L, Smits D, Renfurm R, Verkley GJM, Groenewald M, Chaduli D, Lomascolo A, Welti S, Lesage-Meessen L, Favel A, Al-Hatmi AMS, Damm U, Yilmaz N, Houbraken J, Lombard L, Quaedvlieg W, Binder M, Vaas LAI, Vu D, Yurkov A, Begerow D, Roehl O, Guerreiro M, Fonseca A, Samerpitak K, Van Diepeningen AD, Dolatabadi S, Moreno LF, Casaregola S, Mallet S, Jacques N, Roscini L, Egidi E, Bizet C, Garcia-Hermoso D, Martín MP, Deng S, Groenewald JZ, Boekhout T, De Beer ZW, Barnes I, Duong TA, Wingfield MJ, De Hoog GS, Crous PW, Lewis CT, Hambleton S, Moussa TAA, Al-Zahrani HS, Almaghrabi OA, Louis-Seize G, Assabgui R, McCormick W, Omer G, Dukik K, Cardinali G, Eberhardt U, De Vries M, Robert V. (2015) One fungus, which genes? Development and assessment of universal primers for potential secondary fungal DNA barcodes. Persoonia 35:242-263. 10.3767/003158515X689135 PDF
Musvuugwa T, De Beer ZW, Duong T, Dreyer L, Oberlander K, Roets F. (2015) New species of Ophiostomatales from Scolytinae and Platypodinae beetles in the Cape Floristic Region, including the discovery of the sexual state of Raffaelea. Antonie van Leeuwenhoek 108(4):933-950. 10.1007/s10482-015-0547-7
Wingfield BD, Ades PK, Al-Naemi FA, Beirn LA, Bihon W, Crouch JA, De Beer ZW, De Vos L, Duong TA, Fields CJ, Fourie G, Kanzi AM, Malapi-Wight M, Pethybridge SJ, Radwan O, Rendon G, Slippers B, Santana QC, Steenkamp ET, Taylor PWJ, Vaghefi N, Van der Merwe NA, Veltri D, Wingfield MJ. (2015) IMA Genome-F 4. Draft genome sequences of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygamai, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata. IMA Fungus 6(1):233-248. 10.5598/imafungus.2015.06.01.15 PDF
Marincowitz S, Duong TA, De Beer ZW, Wingfield MJ. (2015) Cornuvesica: A little known mycophilic genus with a unique biology and unexpected new species. Fungal Biology 119:615-630. 10.1016/j.funbio.2015.03.007 PDF
Yin M, Duong TA, Wingfield MJ, Zhou X, De Beer ZW. (2015) Taxonomy and phylogeny of the Leptographium procerum complex, including L. sinense sp. nov. and L. longiconidiophorum sp. nov. Antonie van Leeuwenhoek 107(2):547-563. 10.1007/s10482-014-0351-9 PDF
Duong TA, De Beer ZW, Wingfield BD, Eckhardt LG, Wingfield MJ. (2015) Microsatellite and mating type markers reveal unexpected patterns of genetic diversity in the pine root-infecting fungus Grosmannia alacris. Plant Pathology 64(1):235-242. 10.1111/ppa.12231 PDF
De Beer ZW, Duong TA, Barnes I, Wingfield BD, Wingfield MJ. (2014) Redefining Ceratocystis and allied genera. Studies in Mycology 79:187-219. 10.1016/j.simyco.2014.10.001 PDF
Crous PW, Shivas RG, Quaedvlieg W, Van der Bank M, Zhang Y, Summerell BA, Guarro J, Wingfield MJ, Wood AR, Alfenas AC, Braun U, Cano-Lira JF, García D, Marin-Felix Y, Alvarado P, Andrade JP, Armengol J, Assefa A, Breeÿen AD, Camele I, Cheewangkoon R, Souza JTD, Duong TA, Esteve-Raventós F, Fournier J, Frisullo S, García-Jiménez J, Gardiennet A, Gené J, Hernández-Restrepo M, Hirooka Y, Hospenthal DR, King A, Lechat C, Lombard L, Mang SM, Marbach PAS, Marincowitz S, Marin-Felix Y, Montaño-Mata NJ, Moreno G, Perez CA, Sierra AMP, Robertson JL, Roux J, et al. (2014) Fungal Planet description sheets: 214–280. Persoonia 32:184-306. 10.3767/003158514X682395 PDF
Romón P, De Beer ZW, Zhou XD, Duong TA, Wingfield BD, Wingfield MJ. (2014) Multigene phylogenies of Ophiostomataceae associated with Monterey pine bark beetles in Spain reveal three new fungal species. Mycologia 106(1):119-132. 10.3852/13-073 PDF
Bihon W, Wingfield MJ, Slippers B, Duong TA, Wingfield BD. (2014) MAT gene idiomorphs suggest a heterothallic sexual cycle in a predominantly asexual and important pine pathogen. Fungal Genetics and Biology 62:55-61. 10.1016/j.fgb.2013.10.013 PDF
Taerum SJ, Duong TA, De Beer ZW, Gillette N, Sun J, Owen DR, Wingfield MJ. (2013) Large shift in symbiont assemblage in the invasive red turpentine beetle. PLoS ONE 8(10):e78126. 10.1126/science.aac6674 PDF
Duong TA, De Beer ZW, Wingfield BD, Wingfield MJ. (2013) Characterization of the mating-type genes in Leptographium procerum and Leptographium profanum. Fungal Biology 117(6):411-421. 10.1016/j.funbio.2013.04.005 PDF
Engelbrecht J, Duong TA, van den Berg N. (2013) Development of a Nested Quantitative Real-Time PCR for Detecting Phytophthora cinnamomi in Persea americana Rootstocks. Plant Disease 97(8):1012-1017. 10.1094/PDIS-11-12-1007-RE
Linnakoski R, De Beer ZW, Duong TA, Niemelä P, Pappinen A, Wingfield MJ. (2012) Grosmannia and Leptographium spp. associated with conifer-infesting bark beetles in Finland and Russia, including Leptographium taigense sp. nov. Antonie van Leeuwenhoek 102(2):375-399. 10.1007/s10482-012-9747-6 PDF
Duong TA, De Beer ZW, Zanzot JW, Wingfield MJ, Wingfield BD. (2012) Microsatellite markers for Grosmannia alacris (Ophiostomataceae, Ascomycota) and other species in the G. serpens complex. American Journal of Botany 99(5):E216-E219. 10.3732/ajb.1100527 PDF
Duong TA, De Beer ZW, Wingfield BD, Wingfield MJ. (2012) Phylogeny and taxonomy of species in the Grosmannia serpens complex. Mycologia 104(3):715-732. 10.3852/11-109 PDF
Schoch CL, Seifert KA, Huhndorf S, Robert V, Spouge JL, Levesque CA, Chen W, Bolchacova E, Voigt K, Crous PW, Miller AN, Wingfield MJ, Aime MC, An KD, Bai FY, Barreto RW, Begerow D, Bergeron MJ, Blackwell M, Boekhout T, Bogale M, Boonyuen N, Burgaz AR, Buyck B, Cai L, Cai Q, Cardinali G, Chaverri P, Coppins BJ, Crespo A, Cubas P, Cummings C, Damm U, De Beer ZW, De Hoog GS, Del-Prado R, Dentinger B, Dieguez-Uribeondo J, Divakar PK, Douglas B, Duenas M, Duong TA, et al. (2012) Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proceedings of the National Academy of Sciences of the United States of America 109(16):6241-6246. 10.1073/pnas.1117018109 PDF
Six D, De Beer ZW, Duong TA, Carroll A, Wingfield MJ. (2011) Fungal associates of the lodgepole pine beetle, Dendroctonus murrayanae. Antonie van Leeuwenhoek 100(2):231-244. 10.1007/s10482-011-9582-1 PDF
Thanh V, Mai L, Duong TA. (2008) Microbial diversity of traditional Vietnamese alcohol fermentation starters (banh men) as determined by PCR-mediated DGGE. International Journal of Food Microbiology 128:268-273. 10.1016/j.ijfoodmicro.2008.08.020