FABI Journal Articles
| Publication |
|---|
| Swalarsk-Parry BS, De Vos L, Fru FF, Santana QC, van der Nest MA, Wingfield BD, Wingfield MJ, Herron DA, Ramaswe JB, Dewing C, Sayari M, van der Merwe NA, van Wyk S, Lane FA, Wilson AM, Adegeye OO, Soal NC, Price J-L, Steenkamp ET. (2024) Wide variation in aggressiveness and growth in South African Fusarium circinatum isolates with geographical origin as the primary determinant. Southern Forests: a Journal of Forest Science
10.2989/20702620.2024.2363749 |
| van der Nest MA, Steenkamp ET, De Vos L, Wienk R, Swart V, van den Berg N. (2024) Complete mitochondrial genome sequence of the white root rot pathogen Dematophora necatrix (Xylariaceae: Xylariales). Mitochondrial DNA Part B: Resoures 9(9):1207-1212.
10.1080/23802359.2024.2403411 |
| Midgley KA, van den Berg N, Swart V. (2024) Identification of Phytophthora cinnamomi CRN effectors and their roles in manipulating cell death during Persea americana infection. BMC Genomics 25:435.
10.1186/s12864-024-10358-3 |
Fick A, Swart V, Bombarely A, van den Berg N. (2024) Comparative transcriptional analysis of Persea americana MYB, WRKY and AP2/ERF transcription factors following Phytophthora cinnamomi infection. Molecular Plant Pathology 25(4):e13453.
10.1111/mpp.13453  |
| Dankie VN, Steenkamp ET, De Vos L, Swalarsk-Parry BS, Dewing C, Fru F, Wilken PM, Mchunu NP, Wingfield BD, Wingfield MJ, van der Nest MA. (2024) Growth, pathogenicity and sexual fertility of the African tree pathogen Ceratocystis albifundus. Journal of Plant Pathology :1-11.
10.1007/s42161-024-01634-y |
| Hlongwane NL, Dzomba EF, Hadebe K, van der Nest MA, Pierneef R, Muchadeyi FC. (2024) Identification of signatures of positive selection that have shaped the genomic landscape of South African pig populations. Animals 14:235.
10.3390/ani14020236 |
| De Vos L, van der Nest MA, Santana QC, van Wyk S, Leeuwendaal KS, Wingfield BD, Steenkamp ET. (2024) Chromosome-level assemblies for the pine pitch canker pathogen Fusarium circinatum. Pathogens 13(1):70.
10.3390/pathogens13010070 |
| Joubert M, van den Berg N, Theron J, Swart V. (2024) Global transcriptomic analysis in avocado nursery trees reveals differential gene expression during asymptomatic infection by avocado sunblotch viroid (ASBVd). Virus Research 339:199263.
10.1016/j.virusres.2023.199263. |
| Anbu SP, Swart V, van den Berg N. (2023) Unmasking the invaders: NLR-mal function in plant defense. Frontiers in Plant Science 14:1307294.
10.3389/fpls.2023.1307294 |
| Backer R, Naidoo S, van den Berg N. (2023) The expression of the NPR1-dependent defense response pathway genes in Persea americana (Mill.) following infection with Phytophthora cinnamomi. BMC Plant Biology 23(1):548.
10.1186/s12870-023-04541-z |
| Kooverjee BB, Soma P, van der Nest MA, Scholtz MM, Neser FWC. (2023) Copy Number Variation Discovery in South African Nguni-Sired and Bonsmara-Sired Crossbred Cattle. Animals 13(15):2513.
10.3390/ani13152513 |
| Dzomba EF, Van der Nest MA, Mthembu JNT, Soma P, Snyman MA, Chimonyo M, Muchadeyi FC. (2023) Selection signature analysis and genome-wide divergence of South African Merino breeds from their founders. Frontiers in Genetics 13:932272.
10.3389/fgene.2022.932272 |
| Wingfield BD, Berger DK, Coetzee MPA, Duong TA, Martin A, Pham NQ, Van den Berg N, Wilken PM, Arun-Chinnappa KS, Barnes I, Buthelezi S, Dahanayaka BA, Durán A, Engelbrecht J, Feurtey A, Fourie A, Fourie G, Hartley J, Kabwe ENK, Maphosa M, Narh Mensah DL, Nsibo DL, Potgieter L, Poudel B, Stukenbrock EH, Thomas C, Vaghefi N, Welgemoed T, Wingfield MJ. (2022) IMA genome‑F17 Draft genome sequences of an Armillaria species from Zimbabwe, Ceratocystis colombiana, Elsinoë necatrix, Rosellinia necatrix, two genomes of Sclerotinia minor, short‑read genome assemblies and annotations of four Pyrenophora teres isolates from barley grass, and a long-read genome assembly of Cercospora zeina. 13:19.
10.1186/s43008-022-00104-3 |
| Swalarsk Parry BS, Steenkamp ET, Van Wyk S, Santana QC, van der Nest MA, Hammerbacher A, Wingfield BD, De Vos L. (2022) Identification and characterization of a QTL for growth of Fusarium circinatum on pine-based medium. Journal of Fungi 8(11):1214.
10.3390/jof8111214 |
| Wienk R, Mostert‑O’Neill M, Abeysekara N, Manosalva P, Freeman B, van den Berg N. (2022) Genetic diversity, population structure and clonal verification in South African avocado cultivars using single nucleotide polymorphism (SNP) markers. Tree Genetics and Genomes 18(41)
10.1007/s11295-022-01573-8 |
| Dewing C, van der Nest MA, Santana QC, Proctor RH, Wingfield BD, Steenkamp ET, De Vos L. (2022) Characterization of host-specific genes from Pine- and grass-associated species of the Fusarium fujikuroi species complex. Pathogens 11:858.
10.3390/pathogens11080858 |
| Joubert M, van den Berg N, Theron J, Swart V. (2022) Transcriptomics Advancement in the Complex Response of Plants to Viroid Infection. International Journal of Molecular Sciences 23(7677)
10.3390/ijms23147677 |
| Backer R, Engelbrecht J, van den Berg N. (2022) Differing Responses to Phytophthora cinnamomi Infection in Susceptible and Partially Resistant Persea americana (Mill.) Rootstocks: A Case for the Role of Receptor-Like Kinases and Apoplastic Proteases. Frontiers in Plant Science 13
10.3389/fpls.2022.928176 |
| Kooverjee BB, Soma P, Neser FWC, Van der Nest MA, Scholtz MM. (2022) Selection Signatures in South African Nguni and Bonsmara Cattle Populations Reveal Genes Relating to Environmental Adaptation.. Frontiers in Genetics 13:909012.
10.3389/fgene.2022.909012 |
| Hartley J, Engelbrecht J, Van den Berg N. (2022) Detection and prevalence of Rosellinia necatrix in South African avocado orchards. European Journal of Plant Pathology
10.1007/s10658-022-02532-8 |
| Fick A, Swart V, Van den Berg N. (2022) The ups and downs of plant NLR expression during pathogen infection. Frontiers in Plant Science 13:921148.
10.3389/fpls.2022.921148 |
| Midgley KA, van den Berg N, Swart V. (2022) Unraveling plant cell death during Phytophthora Infection. Microorganisms 10(6)
10.3390/microorganisms10061139 |
| Miyambo TM, Backer R, Engelbrecht J, Joubert F, van der Merwe NA, van den Berg N. (2022) The Identification and Characterization of Endopolygalacturonases in a South African Isolate of Phytophthora cinnamomi. Microorganisms 10(1061)
10.3390/microorganisms10051061 |
| Fick A, Swart V, Backer R, Bombarely A, Engelbrecht J, van den Berg N. (2022) Partially Resistant Avocado Rootstock Dusa® Shows Prolonged Upregulation of Nucleotide Binding-Leucine Rich Repeat Genes in Response to Phytophthora cinnamomi Infection. Frontiers in Plant Science 13:793644.
10.3389/fpls.2022.793644 |
| Wingfield BD, De Vos L, Wilson AM, Duong AT, Vaghefi N, Botes A, Kharwar RN, Chand R, Poudel B, Aliyu H, Barbetti MJ, Chen S, de Maayer P, Liu F, Navathe S, Sinha S, Steenkamp ET, Suzuki H, Tshisekedi KA, van der Nest MA, Wingfield MJ. (2022) Draft genome assemblies of Fusarium marasasianum, Huntiella abstrusa, two Immersiporthe knoxdaviesiana isolates, Macrophomina pseudophaseolina, Macrophomina phaseolina, Naganishia randhawae, and Pseudocercospora cruenta. IMA Fungus 13(1):3.
10.1186/s43008-022-00089-z |
| Engelbrecht J, Duong TA, Paap T, Hulbert JM, Hanneman J, Van den Berg N. (2022) Population genetic analyses of Phytophthora cinnamomi reveals three lineages and movement between natural vegetation and avocado orchards in South Africa.
10.1094/PHYTO-10-21-0414-R |
| Soal NC, Coetzee MPA, Van der Nest MA, Hammerbacher A, Wingfield BD. (2022) Phenolic degradation by catechol dioxygenases is associated with pathogenic fungi with a necrotrophic lifestyle in the Ceratocystidaceae. G3. 12:jkac008.
10.1093/g3journal/jkac008 |
| Magagula P, Taylor N, Swart V, Van den Berg N. (2021) Efficacy of Potential Control Agents Against Rosellinia necatrix and Their Physiological Impact on Avocado. Plant Disease 105(11):PDIS-08.
10.1094/PDIS-08-20-1751-RE |
| Duong AT, Aylward J, Ametrano CG, Poudel E, Santana QC, Wilken PM, Martin A, Arun-Chinnappa KS, De Vos L, DiStefano I, Grewe F, Huhndorf S, Lumbsch HT, Rakoma JR, Steenkamp ET, Sun Y, van der Nest MA, Wingfield MJ, Yilmaz N, Wingfield BD. (2021) Draft genome assembly of Fusarium pilosicola, Meredithiella fracta, Niebla homalea, Pyrenophora teres hybrid WAC10721, and Teratosphaeria viscida. IMA Fungus 12(1):30.
10.1186/s43008-021-00077-9 |
| Joubert M, Backer R, Engelbrecht J, Van den Berg N. (2021) Expression of several Phytophthora cinnamomi putative RxLRs provides evidence for virulence roles in avocado. PLoS ONE 16(7):e0254645.
10.1371/journal.pone.0254645 |
| Engelbrecht J, Duong TA, Prabhu AS, Seedat M, van den Berg N. (2021) Genome of the destructive oomycete Phytophthora cinnamomi provides insights into its pathogenicity and adaptive potential. BMC Genomics 22:302.
10.1186/s12864-021-07552-y |
| van der Nest MA, Chávez R, De Vos L, Duong TA, Gil-Durán C, Ferreira MA, Lane FA, Levicán G, Santana QC, Steenkamp ET, Suzuki H, Tello M, Rakoma JR, Vaca I, Valdés N, Wilken PM, Wingfield MJ, Wingfield BD. (2021) Draft genome sequences of Penicillium roqueforti, Fusarium sororula, Chrysoporthe puriensis, and Chalaropsis populi. IMA Fungus 12:5.
10.1186/s43008-021-00055-1 |
| Van der Nest M, Hlongwane N, Hadebe K, Chan W, Van der Merwe N, De Vos L, Greyling B, Kooverjee B, Soma P, Dzomba E, Bradfield M, Muchadeyi F. (2021) Breed ancestry, divergence, admixture, and selection patterns of the Simbra crossbreed. Frontiers in Genetics 11:1796.
10.3389/fgene.2020.608650 |
| Wilson AM, Gabriel R, Singer SW, Schuerg T, Wilken PM, van der Nest MA, Wingfield MJ, Wingfield BD. (2021) Doing it alone: Unisexual reproduction in filamentous ascomycete fungi. Fungal Biology Reviews 35:1-13.
10.1016/j.fbr.2020.12.003 |
| Sayari M, van der Nest MA, Steenkamp ET, Rahimlou S, Hammerbacher A, Wingfield BD. (2021) Characterization of the Ergosterol Biosynthesis Pathway in Ceratocystidaceae. Journal of Fungi 7(3):237.
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| Van den Berg N, Swart V, Backer R, Fick A, Wienk R, Engelbrecht J, Prabhu S. (2021) Advances in understanding defense mechanisms in Persea americana against Phytophthora cinnamomi. Frontiers in Plant Science 12:123.
10.3389/fpls.2021.636339 |
| Fourie A, de Jonge R, van der Nest MA, Duong TA, Wingfield MJ, Wingfield BD, Barnes I. (2020) Genome comparisons suggest an association between Ceratocystis host adaptations and effector clusters in unique transposable element families. 143:103433.
10.1016/j.fgb.2020.103433 |
| Kanzi AM, Trollip C, Wingfield MJ, Barnes I, van der Nest MA, Wingfield BD. (2020) Phylogenomic incongruence in Ceratocystis: a clue to speciation?. BMC Genomics 21:362.
10.1186/s12864-020-6772-0 |
| Malefo M, Mathibela O, Makgopa E, Crampton BG. (2020) Investigating the role of Bowman-Birk serine protease inhibitor in Arabidopsis plants under drought stress. Plant Physiology and Biochemistry 149:286-293.
10.1016/J.PLAPHY.2020.02.007 |
| Welgemoed T, Pierneef R, Sterck L, Van de Peer Y, Swart V, Scheepers KD, Berger DK. (2020) De novo assembly of transcriptomes from a B73 maize line introgressed with a QTL for resistance to gray leaf spot disease reveals a candidate allele of a lectin receptor-like kinase. Frontiers in Plant Science
http://bit.ly/2SmKPmT |
| Wilson AM, Wilken PM, van der Nest MA, Wingfield MJ, Wingfield BD. (2020) The novel Huntiella omanensis mating gene, MAT1-2-7, is essential for ascomatal maturation. Fungal Genetics & Biology 137:103335.
10.1016/j.fgb.2020.103335 |
| Wingfield BD, van Heerden CJ, van der Nest MA, Steenkamp ET, Roets F, Geiser DM, Duong TA, Dreyer LL, Coetzee MPA, Barnes I, Aylward J, Bushula-Njah VS, Simpson MC, Fourie A, Wingfield MJ. (2019) Draft genome sequences of Fusarium xylarioides, Teratosphaeria gauchensis and T. zuluensis and genome annotation for Ceratocystis fimbriata. IMA Fungus 10(13)
10.1186/s43008-019-0013-7 |
| Fourie A, van der Nest MA, De Vos L, Wingfield MJ, Wingfield BD, Barnes I. (2019) QTL mapping of mycelial growth and aggressiveness to distinct hosts in Ceratocystis pathogens. Fungal Genetics and Biology 131:103242.
10.1016/j.fgb.2019.103242 |
| Wilson AM, van der Nest MA, Wilken PM, Wingfield MJ, Wingfield BD. (2019) It’s All in the Genes: The Regulatory Pathways of Sexual Reproduction in Filamentous Ascomycetes. Genes 10(5):330.
10.3390/genes10050330 |
| Palmer M, Venter SN, McTaggart AR, Coetzee MPA, Van Wyk S, Avontuur JR, Beukes CW, Fourie G, Santana QC, Van der Nest MA, Blom J, Steenkamp ET. (2019) The synergistic effect of concatenation in phylogenomics: the case in Pantoea. PeerJ
10.7717/peerj.6698 |
| Van den Berg N, Du Toit M, Morgan SW, Fourie G, De Beer ZW. (2019) First Report of Fusarium euwallaceae on Persea americana in South Africa. Plant Disease
10.1094/PDIS-10-18-1818-PDN |
| van der Nest MA, Wingfield MJ, McTaggart AR, Van Wyk S, De Vos L, Trollip C, Santana QC, Naidoo K, Dong TA, Wilken PM, Chan W-Y, Palmer M, Soal NA, Roodt D, Steenkamp ET, Wingfield BD. (2019) Genomic analysis of the aggressive tree pathogen Ceratocystis albifundus. Fungal Biology
10.1016/j.funbio.2019.02.002 |
| Zumaquero A, Martinez-Ferri E, Matas AJ, Reeksting B, Olivier NA, Pliego-Alfaro F, Barcelo A, van den Berg N, Pliego C. (2019) Rosellinia necatrix infection induces differential gene expression between tolerant and susceptible avocado rootstocks. PLoS ONE 14(2):e0212359.
10.1371/journal.pone.0212359 |
| Backer R, Naidoo S, van den Berg N. (2019) The NONEXPRESSOR OF PATHOGENESIS-RELATED GENES 1 (NPR1) and Related Family: Mechanistic Insights in Plant Disease Resistance. Frontiers in Plant Science 10:102.
10.3389/fpls.2019.00102 |
| Nsibo DL, Barnes I, Kunene NT, Berger DK. (2019) Influence of farming practices on the population genetics of the maize pathogen Cercospora zeina in South Africa. Fungal Genetics and Biology 125:36-44.
10.1016/j.fgb.2019.01.005 |
| Kuhn DN, Livingstone DS, Richards JH, Manosalva P, van den Berg N, Chambers AH. (2019) Application of genomic tools to avocado (Persea americana) breeding: SNP discovery for genotyping and germplasm characterization. Scientia Horticulturae 246:1-11.
10.1016/j.scienta.2018.10.011 |
| Sayari M, van der Nest MA, Steenkamp ET, Soal NC, Wilken PM, Wingfield BD. (2019) Distribution and evolution of nonribosomal peptide synthetase gene clusters in the Ceratocystidaceae. Genes 10, 328
10.3390/genes10050328 |
| Sayari M, van der Nest MA, Steenkamp ET, Adegeye OO, Marincowitz S, Wingfield BD. (2019) Agrobacterium-mediated transformation of Ceratocystis albifundus. Microbiological Research 226:55-64.
10.1016/j.micres.2019.05.004 |
| Wingfield BD, Kolarik M, Menzies JG, Naidoo K, Pochopski O, Shoukouhi P, Santana QC, Seifert KA, Soal NA, Steenkamp ET, Tatham CT, Van der Nest MA, Havenga M, Findlay W, Liu M, Nguyen HDT, Lane FA, Morgan SW, De Vos L, Wilken PM, Doung TA, Aylward J, Coetzee MPA, Dadej K, De Beer ZW, Wingfield MJ. (2018) Nine draft genome sequences of Claviceps purpurea s.lat., including C. arundinis, C. humidiphila, and C. cf. spartinae, pseudomolecules for the pitch canker pathogen Fusarium circinatum, draft genome of Davidsoniella eucalypti, Grosmannia galeiformis, Quambalaria eucalypti, and Teratosphaeria destructans. IMA Fungus 9(2):401-418.
10.5598/imafungus.2018.09.02.10 |
| van den Berg N, Mohamed W, Olivier NA, Swart V, Crampton B. (2018) Transcriptome analysis of an incompatible Persea americana-Phytophthora cinnamomi interaction reveals the involvement of SA- and JA-pathways in a successful defense response. PLoS ONE 13(10):e0205705.
10.1371/journal.pone.0205705 |
| Simpson MC, Martin Coetzee, Magriet van der Nest, Mike Wingfield, Brenda Wingfield. (2018) Ceratocystidaceae exhibit high levels of recombination at the mating-type (MAT) locus. Fungal Biology 122(12):1184-1191.
10.1016/j.funbio.2018.09.003 |
| Wingfield BD, Bills GF, Dong Y, Huang W, Nel WJ, Swalarsk-Parry BS, Vaghefi N, Wilken PM, An Z, de Beer ZW, De Vos L, Chen L, Duong TA, Gao Y, Hammerbacher A, Kikkert JR, Li Y, Li H, Li K, Li Q, Liu X, Ma X, Naidoo K, Pethybridge SJ, Sun J, Steenkamp ET, van der Nest M, van Wyk S, Wingfield MJ, Xiong C, Yue Q, Zhang X. (2018) IMA Genome-F 9 Draft genome sequence of Annulohypoxylon stygium, Aspergillus mulundensis, Berkeleyomyces basicola (syn. Thielaviopsis basicola), Ceratocystis smalleyi, two Cercospora beticola strains, Coleophoma cylindrospora, Fusarium fracticaudum, Phialophora cf. hyalina, and Morchella septimelata. IMA Fungus 9(1):199-223.
10.5598/imafungus.2018.09.01.13 |
| Sayari M, Steenkamp ET, van der Nest MA, Wingfield BD. (2018) Diversity and evolution of polyketide biosynthesis gene clusters in the Ceratocystidaceae. Fungal Biology 122(9):856-866.
10.1016/j.funbio.2018.04.011 |
| van den Berg N, Hartley J, Engelbrecht J, Mufamadi Z, Mavuso Z, van Rooyen Z. (2018) First Report of White Root Rot caused by Rosellinia necatrix on Persea americana in South Africa. Plant Disease 102(9):1850.
10.1094/PDIS-10-17-1637-PDN |
| Fourie A, Wingfield MJ, Wingfield BD, van der Nest MA, Loots MT, Barnes I. (2018) Inheritance of phenotypic traits in the progeny of a Ceratocystis interspecific cross. Fungal Biology 122:717-729.
10.1016/j.funbio.2018.03.001 |
| Wilson A, Van der Nest M, Wilken P, Wingfield M, Wingfield B. (2018) Pheromone expression reveals putative mechanism of unisexuality in a saprobic ascomycete fungus. PLOS One 13(3):e0192517.
10.1371/journal.pone.0192517 |
| van den Berg N, Christie JB, Engelbrecht J, Aveling TAS. (2018) Callose and β-1,3-glucanase inhibit Phytophthora cinnamomi in a resistant avocado rootstock. Plant Pathology 67(5):1150-1160.
10.1111/ppa.12819 |
| Wilken PM, Steenkamp ET, Van der Nest MA, Wingfield MJ, De Beer ZW, Wingfield BD. (2018) Unexpected placement of the MAT1-1-2 gene in the MAT1-2 idiomorph of Thielaviopsis. Fungal Genetics and Biology 32:32-41.
10.1016/j.fgb.2018.01.007 |
| Engelbrecht J, Duong TA, van den Berg N. (2017) New microsatellite markers for population studies of Phytophthora cinnamomi, an important global pathogen. Scientific Reports 7:17631.
10.1038/s41598-017-17799-9 |
| Wingfield BD, Berger DK, Steenkamp ET, Lim H-J, Duong TA, Bluhm BH, De Beer ZW, De Vos L, Fourie G, Naidoo K, Olivier NA, Lin Y, Van der Peer Y, Joubert F, Crampton BG, Swart V, Soal N, Tatham C, Van der Nest MA, Van der Merwe NA, Van Wyk S, Wilken PM, Wingfield MJ. (2017) IMA Genome-F 8 Draft genome of Cercospora zeina, Fusarium pininemorale, Hawksworthiomyces lignivorus, Huntiella decipiens and Ophiostoma ips. IMA Fungus 8 (2):385‑396.
10.5598/imafungus.2017.08.02.10 |
| Prabhu A, Ndlovu B, Engelbrecht J, van den Berg N. (2017) Generation of composite Persea americana (Mill.) (avocado) plants: A proof-of-concept-study. PLoS ONE 12(10): e0185896.
10.1371/journal.pone.0185896 |
| Swart V, Crampton BG, Ridenour JB, Bluhm BH, Olivier NA, Meyer JJM, Berger DK. (2017) Complementation of CTB7 in the maize pathogen Cercospora zeina overcomes the lack of in vitro cercosporin production. Molecular Plant-Microbe Interactions 30(9):710-724.
10.1094/MPMI-03-17-0054-R |
| Christie N, Myburg AA, Joubert F, Murray SL, Carstens M, Lin Y-C, Meyer J, Crampton BG, Christensen SA, Ntuli JF, Wighard SS, Van de Peer Y, Berger DK. (2017) Systems genetics reveals a transcriptional network associated with susceptibility in the maize-gray leaf spot pathosystem. The Plant Journal 89(4):746-763.
10.1111/tpj.13419 |
| Reitmann A, Berger DK, van den Berg N. (2017) Putative pathogenicity genes of Phytophthora cinnamomi identified via RNA-Seq analysis of pre-infection structures. European Journal of Plant Pathology 147(1):211-228.
10.1007/s10658-016-0993-8 |
| Wingfield BD, Duong TA, Hammerbacher A, van der Nest MA, Wilson A, Chang R, de Beer ZW, Steenkamp ET, Wilken PM, Naidoo K, Wingfield MJ. (2016) IMA Genome-F 7 Draft genome sequences for Ceratocystis fagacearum, C. harringtonii, Grosmannia penicillata, and Huntiella bhutanensis. IMA Fungus 7(2):317-323.
10.5598/imafungus.2016.07.02.11 |
| Muller MF, Barnes I, Kunene NT, Crampton BG, Bluhm B, Phillips S, Olivier NA, Berger DK. (2016) Cercospora zeina from maize in South Africa exhibits high genetic diversity and lack of regional population differentiation. Phytopathology 106(10):1194-1205.
10.1094/PHYTO-02-16-0084-FI |
| Wingfield BD, Ambler JM, Coetzee MPA, De Beer ZW, Duong TA, Joubert F, Hammerbacher A, McTaggart AR, Naidoo K, Nguyen HDT, Ponomareva E, Santana QS, Seifert KA, Steenkamp ET, Trollip C, Van der Nest MA, Visagie CM, Wilken PM, Wingfield MJ, Yilmaz N. (2016) IMA Genome-F 6: Draft genome sequences of Armillaria fuscipes, Ceratocystiopsis minuta, Ceratocystis adiposa, Endoconidiophora laricicola, E. polonica and Penicillium freii DAOMC 242723. IMA Fungus 7(1):217-227.
10.5598/imafungus.2016.07.01.11 |
| McTaggart AR, van der Nest MA, Steenkamp ET, Roux J, Slippers B, Shuey LS, Wingfield MJ, Drenth A. (2016) Fungal Genomics Challenges the Dogma of Name-Based Biosecurity. PLoS Pathogens 12(5):e1005475.
10.1371/journal.ppat.1005475 |
| Meyer FE, Shuey LS, Ramsuchit S, Mamni T, Berger DK, van den Berg N, Myburg AA, Naidoo S. (2016) Dual RNA-sequencing of Eucalyptus nitens during Phytophthora cinnamomi challenge reveals pathogen and host factors influencing compatibility. Frontiers in Plant Science 7:191.
10.3389/fpls.2016.00191 |
| McTaggart AR, Shivas RG, van der Nest MA, Roux J, Wingfield BD, Wingfield MJ. (2016) Host jumps shaped the diversity of extant rust fungi (Pucciniales). New Phytologist 209(3):1149-1158.
10.1111/nph.13686 |
| Reeksting B, Olivier N.A, van den Berg N. (2016) Transcriptome responses of an ungrafted Phytophthora root rot tolerant avocado (Persea americana) rootstock to flooding and Phytophthora cinnamomi. BMC Plant Biology 16(205)
10.1186/s12870-016-0893-2 |
| van der Nest MA, Wingfield MJ, Wilken PM, Coetzee MPA, Naidoo K, Roodt D, Sauerman E, Godlonton T, Trollip C, McTaggart AR, Steenkamp ET, Wingfield BD. (2015) Saprophytic and pathogenic fungi in the Ceratocystidaceae differ in their ability to metabolize plant-derived sucrose. BMC Evolutionary Biology 15:273.
10.1186/s12862-015-0550-7 |
| Wingfield BD, Barnes I, De Beer ZW, De Vos L, Duong TA, Kanzi AM, Naidoo K, Nguyen HDT, Santana QC, Sayari M, Seifert KA, Steenkamp ET, Trollip C, Van der Merwe N, Van der Nest MA, Wilken PM, Wingfield MJ. (2015) Draft genome sequences of Ceratocystis eucalypticola, Chrysoporthe cubensis, C. deuterocubensis, Davidsoniella virescens, Fusarium temperatum, Graphilbum fragrans, Penicillium nordicum, and Thielaviopsis musarum. IMA Fungus 6(2):493-506.
10.5598/imafungus.2015.06.02.13 |
| Wilson AM, Wilken PM, van der Nest MA, Steenkamp ET, Wingfield MJ, Wingfield BD. (2015) Homothallism: An umbrella term for describing diverse sexual behaviours. IMA Fungus 6(1):207-214.
10.5598/imafungus.2015.06.01.13 |
 Wilson AM, Godlonton T, van der Nest MA, Wilken PM, Wingfield MJ, Wingfield BD. (2015) Unisexual Reproduction in Huntiella moniliformis. Fungal Genetics and Biology 80:1-9.
10.1016/j.fgb.2015.04.008 |
| Backer R, Mahomed W, Reeksting B, Engelbrecht J, Ibarra-Laclette E, van den Berg N. (2015) Phylogenetic and expression analysis of the NPR1-like gene family from Persea americana (Mill.). Frontiers in Plant Science 6:300.
10.3389/fpls.2015.00300 |
| Van der Nest MA, Beirn LA, Crouch JA, Demers JE, De Beer ZW, De Vos L, Gordon TR, Moncalvo JM, Naidoo K, Sanchez-Ramirez S, Roodt D, Santana QC, Slinksi SL, Stata M, Taerum SJ, Wilken PM, Wilson AM, Wingfield MJ, Wingfield BD. (2014) Draft genomes of Amanita jacksonii, Ceratocystis albifundus, Fusarium circinatum, Huntiella omanensis, Leptographium procerum, Rutstroemia sydowiana, and Sclerotinia echinophila. IMA Fungus 5(2):473-486.
10.5598/imafungus.2014.05.02.11 |
| Van der Nest MA, Olson A, Karlsson M, Lind M, Dalman K, Brandström-Durling M, Elfstrand M, Wingfield BD, Stenlid J. (2014) Gene expression associated with intersterility in Heterobasidion. Fungal Genetics and Biology 73:104-119.
10.1016/j.fgb.2014.10.008 |
| Van der Nest MA, Bihon W, De Vos L, Naidoo K, Roodt D, Rubagotti E, Slippers B, Steenkamp ET, Wilken PM, Wilson A, Wingfield MJ, Wingfield BD. (2014) Draft genome sequences of Diplodia sapinea, Ceratocystis manginecans, and Ceratocystis moniliformis. IMA Fungus 5(1):135-140.
10.5598/imafungus.2014.05.01.13 |
| Berger DK, Carstens M, Korsman JN, Middleton F, Kloppers FJ, Tongoona P, Myburg AA. (2014) Mapping QTL conferring resistance in maize to gray leaf spot disease caused by Cercospora zeina. BMC Genetics 15:60.
10.1186/1471-2156-15-60 |
| Reeksting BJ, Coetzer N, Mahomed W, Engelbrecht J, van den Berg N. (2014) De novo sequencing, assembly, and analysis of the root transcriptome of Persea americana (Mill.) in response to Phytophthora cinnamomi and flooding. PLoS ONE 9(2):e86399.
10.1371/journal.pone.0086399 |
| van der Nest M, Olson Å, Lind M, Vélëz H, Dalman K, Brandström-Durling M, Karlsson M, Stenlid J. (2014) Distribution and evolution of het gene homologs in the Basidiomycota. Fungal Genetics and Biology 64:45–57.
10.1016/j.fgb.2013.12.007 |
| Reeksting BJ, Taylor N, van den Berg N. (2014) Flooding and Phytophthora cinnamomi: Effects on photosynthesis and chlorophyll fluorescence in shoots of non-grafted Persea americana (Mill.) rootstocks differing in tolerance to Phytophthora root rot. South African Journal of Botany 95:40-53.
10.1016/j.sajb.2014.08.004 |
| van der Nest MA, Steenkamp ET, Wilken MP, Stenlid J, Wingfield MJ, Wingfield BD, Slippers B. (2013) Mutualism and asexual reproduction influence recognition genes in a fungal symbiont. Fungal Biology 117:439-450.
10.1016/j.funbio.2013.05.001 |
| Engelbrecht J, van den Berg N. (2013) Expression of defence-related genes against Phytophthora cinnamomi in five avocado rootstocks. South African Journal of Science 109(11/12):1-8.
10.1590/sajs.2013/20120058 |
| Sutherland R, Viljoen A, Myburg AA, van den Berg N. (2013) Pathogenicity associated genes in Fusarium oxysporum f. sp. cubense race 4. South African Journal of Science 109
10.1590/ sajs.2013/20120023 |
| Engelbrecht J, Duong TA, van den Berg N. (2013) Development of a Nested Quantitative Real-Time PCR for Detecting Phytophthora cinnamomi in Persea americana Rootstocks. Plant Disease 97(8):1012-1017.
10.1094/PDIS-11-12-1007-RE |
 Wingfield BD, Steenkamp ET, Santana QC, Coetzee MPA, Bam S, Barnes I, Beukes CW, Chane W-Y, de Vos L, Fourie G, Friend M, Gordon TR, Herron DA, Holt C, Korf I, Kvas M, Martin SH, Mlonyeni XO, Naidoo K, Phasha MM, Postma A, Reva O, Roos H, Simpson M, Slinski S, Slippers B, Sutherland R, van der Merwe NA, van der Nest MA, Venter SNV, Wilken PM, Yandell M, Zipfel R, Wingfield MJ. (2012) First fungal genome sequence from Africa: a preliminary analysis. South African Journal of Science 108:104-122.
10.4102/sajs.v108i1/2.537 |
| Lind M, van der Nest M, Olson Å, Brandström-Durling M, Stenlid J. (2012) A full 2nd generation linkage map of Heterobasidion annosum s.l. based on in silica anchoring of AFLP-markers. PLoS ONE 7:e48347.
10.1371/journal.pone.0048347 |
 De Vos L, van der Nest MA, van der Merwe NA, Myburg AA, Wingfield MJ, Wingfield BD. (2011) Genetic analysis of growth, morphology and pathogenicity in the F1 progeny of an interspecific cross between Fusarium circinatum and Fusarium subglutinans. Fungal Biology 115(9):902-908.
10.1016/j.funbio.2011.07.003 |
| Mahomed W, van den Berg N. (2011) EST sequencing and gene expression profiling of defence-related genes from Persea americana infected with Phytophthora cinnamomi. BMC Plant Biology 11(167)
10.1186/1471-2229-11-167 |
| Nola S, Daigaku R, Smolarczyk K, Carstens M, Martin-Martin B, Longmore G, Bailly M, Braga VMM. (2011) Ajuba is required for Rac activation and maintenance of E-cadherin adhesion. The Journal of Cell Biology 195(5):855-871.
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| van der Nest MA, Steenkamp ET, Slippers B, Mongae A, van Zyl K, Stenlid J, Wingfield MJ, Wingfield BD. (2011) Gene expression associated with vegetative incompatibility in Amylostereum areolatum. Fungal Genetics and Biology 48(11):1034-1043.
10.1016/j.fgb.2011.08.001 |
| van der Nest MA, Slippers B, Steenkamp ET, De Vos L, Van Zyl K, Stenlid J, Wingfield MJ, Wingfield BD. (2009) Genetic linkage map for Amylostereum areolatum reveals an association between vegetative growth and sexual and self-recognition. Fungal Genetics and Biology 46(9):632-641.
10.1016/j.fgb.2009.06.002 |
| van den Berg N, Berger DK, Hein I, Birch PRJ, Wingfield MJ, Viljoen A. (2009) Genes up-regulated in tolerant cavendish banana roots in response to Fusarium oxysporum f. sp. cubense infection. Acta Horticulturae 828:273-282.
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| Endah R, Beyene G, Kiggundu A, van den Berg N, Schlütera U, Kunert K, Chikwambaab R. (2008) Elicitor and Fusarium-induced expression of NPR1-like genes in banana. Plant Physiology and Biochemistry 46(11)
10.1016/j.plaphy.2008.06.007 |
| van der Nest MA, Slippers B, Stenlid J, Wilken PM, Vasaitis R, Wingfield MJ, Wingfield BD. (2008) Characterization of the systems governing sexual and self-recognition in the white rot homobasidiomycete Amylostereum areolatum. Current Genetics 53(6):323-336.
10.1007/s00294-008-0188-8 |
| van den Berg N, Serfontein S, Christie B, Munro C. (2008) First Report of Raceme Blight Caused by Cladosporium cladosporioides on Macadamia Nuts in South Africa. Plant Disease 92(3)
10.1094/PDIS-92-3-0484C |
| van den Berg N, Berger DK, Hein I, Birch PRJ, Wingfield MJ, Viljoen A. (2007) Tolerance in banana to Fusarium wilt is associated with early up-regulation of cell wall-strengthening genes in the roots. Molecular Plant Pathology 8(3):333-341.
10.1111/j.1364-3703.2007.00389.x |
| Groenewald S, van den Berg N, Marasas WFO, Viljoen A. (2006) The application of high-throughput Amplified Fragment Length Polymorphisms in assessing genetic diversity in Fusarium oxysporum f.sp. cubense . Mycological Research 110(3):297-305.
10.1016/j.mycres.2005.10.004 |
| Groenewald S, van den Berg N, Marasas WFO, Viljoen A. (2006) Biological, physiological and pathogenic variation in a genetically homogenous population of Fusarium oxysporum f.sp. cubense. Australasian Plant Pathology 35:401-409.
10.1071/AP06041 |
| Ingle RA, Carstens M, Denby KJ. (2006) PAMP recognition and the plant–pathogen arms race. BioEssays 28(9):880-889.
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| Crampton BG, van den Berg N, Hein I, Birch PRJ, Berger DK. (2004) High-throughput screening of suppression subtractive hybridization cDNA libraries using DNA microarray analysis. BioTechniques 37(5):818-824.
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| Carstens M, Vivier MA, Pretorius IS. (2003) The Saccharomyces cerevisiae chitinase, encoded by the CTS1-2 gene, confers antifungal activity against Botrytis cinerea to transgenic tobacco. Transgenic Research 12(4):497-508.
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| Carstens M, Vivier MA, Van Rensburg P, Pretorius IS. (2003) Overexpression, secretion and antifungal activity of the Saccharomyces cerevisiae chitinase. Annals of Microbiology 53:15-28.
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| Steenkamp ET, Van Der Nest MA, Wingfield MJ, Wingfield BD. (2003) Detection of hybrids in commercially propagated Eucalyptus using 5S rDNA sequence. Forest Genetics 10:195-205.
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| van den Berg N, Venter SL, Aveling TAS . (2003) Infection studies of Alternaria cassiae on cowpea. Australasian Plant Pathology 32
10.1071/AP02056 |
| van den Berg N, Aveling TAS, Venter SL. (2002) The evaluation of six fungicides for reducing Alternaria cassiae on cowpea seed. Crop Protection 21:501-505.
PII:S0261-2194(01)00140-5 |
| van den Berg N, Aveling TAS, van der Merwe CF. (2002) Conidial morphology and development of Alternaria cassiae from cowpea. African Plant Protection 8(1):69-74.
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| van der Nest M, Steenkamp ET, Wingfield BD, Wingfield MJ. (2000) Development of simple sequence repeat (SSR) markers in Eucalyptus from amplified inter-simple sequence repeats (ISSR). Plant Breeding 119 :433-436.
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